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1

Molecular Insights into the Biosynthesis of Guadinomine: A Type III Secretion System Inhibitor

Holmes, Tracy C., May, Aaron E., Zaleta-Rivera, Kathia, Ruby, J. Graham, Skewes-Cox, Peter, Fischbach, Michael A., DeRisi, Joseph L., Iwatsuki, Masato, O̅mura, Satoshi, Khosla, Chaitan

Journal:

Journal of the American Chemical Society

Year:

2012

Language:

english

File:

PDF, 2.29 MB

english, 2012

2

Neurologic Complications of Common Variable Immunodeficiency

Nguyen, Jenna Thuc-Uyen, Green, Ari, Wilson, Michael R., DeRisi, Joseph L., Gundling, Katherine

Journal:

Journal of Clinical Immunology

Year:

2016

Language:

english

File:

PDF, 582 KB

english, 2016

3

Fatal Powassan Encephalitis (Deer Tick Virus, Lineage II) in a Patient With Fever and Orchitis Receiving Rituximab

Solomon, Isaac H., Spera, Kristyn M., Ryan, Sophia L., Helgager, Jeffrey, Andrici, Juliana, Zaki, Sherif R., Vaitkevicius, Henrikas, Leon, Kristoffer E., Wilson, Michael R., DeRisi, Joseph L., Koo, So

Journal:

Year:

2018

Language:

english

File:

PDF, 1.26 MB

english, 2018

4

Low-cost touchscreen driven programmable dual syringe pump for life science applications

Garcia, Valentina E., Liu, Jamin, DeRisi, Joseph L.

Journal:

Year:

2018

File:

PDF, 1.60 MB

2018

5

Assessing biosynthetic potential of agricultural groundwater through metagenomic sequencing: A diverse anammox community dominates nitrate-rich groundwater

Ludington, William B., Seher, Thaddeus D., Applegate, Olin, Li, Xunde, Kliegman, Joseph I., Langelier, Charles, Atwill, Edward R., Harter, Thomas, DeRisi, Joseph L., Yang, Shihui

Journal:

Year:

2017

Language:

english

File:

PDF, 3.74 MB

english, 2017

6

Miniaturization and optimization of 384-well compatible RNA sequencing library preparation

Mayday, Madeline Y., Khan, Lillian M., Chow, Eric D., Zinter, Matt S., DeRisi, Joseph L., Thomas, Torsten

Journal:

Year:

2019

Language:

english

File:

PDF, 1.84 MB

english, 2019

7

Identification of anisomycin, prodigiosin and obatoclax as compounds with broad-spectrum anti-parasitic activity

Ehrenkaufer, Gretchen, Li, Pengyang, Stebbins, Erin E., Kangussu-Marcolino, Monica M., Debnath, Anjan, White, Corin V., Moser, Matthew S., DeRisi, Joseph, Gisselberg, Jolyn, Yeh, Ellen, Wang, Steven C

Journal:

PLoS Neglected Tropical Diseases

Year:

2020

Language:

english

File:

PDF, 5.24 MB

english, 2020

8

Synthesis of Ring-Substituted 4-Aminoquinolines and Evaluation of Their Antimalarial Activities.

Peter B. Madrid, John Sherrill, Ally P. Liou, Jennifer L. Weisman, Joseph L. DeRisi, R. Kiplin Guy

Journal:

Year:

2005

Language:

english

File:

PDF, 23 KB

english, 2005

9

Parallel synthesis of 9-aminoacridines and their evaluation against chloroquine-resistant Plasmodium falciparum

Marc O. Anderson, John Sherrill, Peter B. Madrid, Ally P. Liou, Jennifer L. Weisman, Joseph L. DeRisi, R. Kiplin Guy

Journal:

Bioorganic & Medicinal Chemistry

Year:

2006

Language:

english

File:

PDF, 423 KB

english, 2006

10

Synthesis of ring-substituted 4-aminoquinolines and evaluation of their antimalarial activities

Peter B. Madrid, John Sherrill, Ally P. Liou, Jennifer L. Weisman, Joseph L. DeRisi, R. Kiplin Guy

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

2005

Language:

english

File:

PDF, 272 KB

english, 2005

11

Functional genomic analysis of a commercial wine strain of Saccharomyces cerevisiae under differing nitrogen conditions

Leilah E Backhus, Joseph DeRisi, Patrick O Brown, Linda F Bisson

Journal:

FEMS Yeast Research

Year:

2001

Language:

english

File:

PDF, 115 KB

english, 2001

12

Shotgun DNA microarrays and stage-specific gene expression in Plasmodium falciparum malaria

Rhian E. Hayward, Joseph L. DeRisi, Suad Alfadhli, David C. Kaslow, Patrick O. Brown, Pradipsinh K. Rathod

Journal:

Molecular Microbiology

Year:

2000

Language:

english

File:

PDF, 311 KB

english, 2000

13

VersaCount: customizable manual tally software for cell counting

Charles C Kim, Joseph L DeRisi

Journal:

Source Code for Biology and Medicine

Year:

2010

Language:

english

File:

PDF, 373 KB

english, 2010

14

Functional genomic analysis of a commercial wine strain of Saccharomyces cerevisiae under differing nitrogen conditions

Leilah E. Backhus, Joseph DeRisi, Patrick O. Brown, Linda F. Bisson

Journal:

FEMS Yeast Research

Year:

2001

Language:

english

File:

PDF, 1.74 MB

english, 2001

15

Searching for New Antimalarial Therapeutics amongst Known Drugs

Jennifer L. Weisman, Ally P. Liou, Anang A. Shelat, Fred E. Cohen, R. Kiplin Guy, Joseph L. DeRisi

Journal:

Chemical Biology & Drug Design

Year:

2006

Language:

english

File:

PDF, 168 KB

english, 2006

16

Yeast genomics and other DNA microarray exploits

DeRisi, Joseph L.

Journal:

Nature Genetics

Year:

1999

Language:

english

File:

PDF, 89 KB

english, 1999

17

Mapping single and multigenetic traits in S. cerevisiae by genomic mismatch scanning and DNA microarrays

Hayashibara, Kathleen C., Ray, Esha, Elashoff, David, DeRisi, Joseph, McCusker, John H., Siegmund, David O., Brown, Patrick O.

Journal:

Nature Genetics

Year:

1999

Language:

english

File:

PDF, 120 KB

english, 1999

18

Drug target validation and identification of secondary drug target effects using DNA microarrays

Marton, Matthew J., DeRisi, Joseph L., Bennett, Holly A., Iyer, Vishwanath R., Meyer, Michael R., Roberts, Christopher J., Stoughton, Roland, Burchard, Julja, Slade, David, Dai, Hongyue

Journal:

Nature Medicine

Year:

1998

Language:

english

File:

PDF, 596 KB

english, 1998

19

Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise

Newman, John R. S., Ghaemmaghami, Sina, Ihmels, Jan, Breslow, David K., Noble, Matthew, DeRisi, Joseph L., Weissman, Jonathan S.

Journal:

Year:

2006

Language:

english

File:

PDF, 1.07 MB

english, 2006

20

De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis

Fordyce, Polly M, Gerber, Doron, Tran, Danh, Zheng, Jiashun, Li, Hao, DeRisi, Joseph L, Quake, Stephen R

Journal:

Nature Biotechnology

Year:

2010

Language:

english

File:

PDF, 1.21 MB

english, 2010

21

Utility of DNA Microarrays for Detection of Viruses in Acute Respiratory Tract Infections in Children

Charles Y. Chiu, Anatoly Urisman, Tara L. Greenhow, Silvi Rouskin, Shigeo Yagi, David Schnurr, Carolyn Wright, W. Lawrence Drew, David Wang, Peggy S. Weintrub, Joseph L. DeRisi, Don Ganem

Journal:

The Journal of Pediatrics

Year:

2008

Language:

english

File:

PDF, 855 KB

english, 2008

22

Genome-wide identification of genes upregulated at the onset of gametocytogenesis in Plasmodium falciparum

Francesco Silvestrini, Zbynek Bozdech, Alessandra Lanfrancotti, Eugenia Di Giulio, Emanuele Bultrini, Leonardo Picci, Joseph L. deRisi, Elisabetta Pizzi, Pietro Alano

Journal:

Molecular and Biochemical Parasitology

Year:

2005

Language:

english

File:

PDF, 485 KB

english, 2005

23

N-terminal processing of proteins exported by malaria parasites

Henry H. Chang, Arnold M. Falick, Peter M. Carlton, John W. Sedat, Joseph L. DeRisi, Michael A. Marletta

Journal:

Molecular and Biochemical Parasitology

Year:

2008

Language:

english

File:

PDF, 929 KB

english, 2008

24

DNA microarrays for malaria

Pradipsinh K. Rathod, Karthikeyan Ganesan, Rhian E. Hayward, Zbynek Bozdech, Joseph L. DeRisi

Journal:

Trends in Parasitology

Year:

2002

Language:

english

File:

PDF, 120 KB

english, 2002

25

Plate-based transfection and culturing technique for genetic manipulation ofPlasmodium falciparum

Florence Caro, Mathew G Miller, Joseph L DeRisi

Journal:

Malaria Journal

Year:

2012

Language:

english

File:

PDF, 498 KB

english, 2012

26

Improved methods for magnetic purification of malaria parasites and haemozoin

Charles C Kim, Emily B Wilson, Joseph L DeRisi

Journal:

Malaria Journal

Year:

2010

Language:

english

File:

PDF, 422 KB

english, 2010

27

Pernicious plans revealed: Plasmodium falciparum genome wide expression analysis

Manuel Llinás, Joseph L DeRisi

Journal:

Current Opinion in Microbiology

Year:

2004

Language:

english

File:

PDF, 864 KB

english, 2004

28

Genome microarray analysis of transcriptional activation in multidrug resistance yeast mutants

Joseph DeRisi, Bart van den Hazel, Philippe Marc, Elisabetta Balzi, Patrick Brown, Claude Jacq, André Goffeau

Journal:

Year:

2000

Language:

english

File:

PDF, 152 KB

english, 2000

29

Corrigendum to “Functional genomic analysis of a commercial wine strain of Saccharomyces cerevisiae under different nitrogen conditions”: [FEMS Yeast Res. 1 (2001) 111–125]

Leilah E Backhus, Joseph DeRisi, Patrick O Brown, Linda F Bisson

Journal:

FEMS Yeast Research

Year:

2003

Language:

english

File:

PDF, 117 KB

english, 2003

30

Synthesis and Evaluation of 7-Substituted 4-Aminoquinoline Analogues for Antimalarial Activity

Hwang, Jong Yeon, Kawasuji, Takashi, Lowes, David J., Clark, Julie A., Connelly, Michele C., Zhu, Fangyi, Guiguemde, W. Armand, Sigal, Martina S., Wilson, Emily B., DeRisi, Joseph L., Guy, R. Kiplin

Journal:

Journal of Medicinal Chemistry

Year:

2011

Language:

english

File:

PDF, 3.56 MB

english, 2011

31

A Microfluidics-Based Platform For Identification and Detailed Characterization of Transcription Factor Binding Sites

Fordyce, Polly M., Gerber, Doron, Tran, Danh, Zheng, Jiashun, Li, Hao, Quake, Steven R., DeRisi, Joseph L.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 35 KB

english, 2010

32

Complete genome sequence of an astrovirus identified in a domestic rabbit (Oryctolagus cuniculus) with gastroenteritis

Mark D Stenglein, Eric Velazquez, Cheryl Greenacre, Rebecca P Wilkes, J Graham Ruby, Julia S Lankton, Donald Ganem, Melissa A Kennedy, Joseph L DeRisi

Journal:

Virology Journal

Year:

2012

Language:

english

File:

PDF, 396 KB

english, 2012

33

Optimization of Propafenone Analogues as Antimalarial Leads

Lowes, David J., Guiguemde, W. Armand, Connelly, Michele C., Zhu, Fangyi, Sigal, Martina S., Clark, Julie A., Lemoff, Andrew S., Derisi, Joseph L., Wilson, Emily B., Guy, R. Kiplin

Journal:

Journal of Medicinal Chemistry

Year:

2011

Language:

english

File:

PDF, 1.17 MB

english, 2011

34

Whole-genome analysis of mRNA decay inPlasmodium falciparumreveals a global lengthening of mRNA half-life during the intra-erythrocytic development cycle

Jennifer L Shock, Kael F Fischer, Joseph L DeRisi

Journal:

Year:

2007

Language:

english

File:

PDF, 740 KB

english, 2007

35

Structural Characterization of the Glycoprotein GP2 Core Domain from the CAS Virus, a Novel Arenavirus-Like Species

Koellhoffer, Jayne F., Dai, Zhou, Malashkevich, Vladimir N., Stenglein, Mark D., Liu, Yanyun, Toro, Rafael, S. Harrison, Joseph, Chandran, Kartik, DeRisi, Joseph L., Almo, Steven C., Lai, Jonathan R.

Journal:

Journal of Molecular Biology

Year:

2014

Language:

english

File:

PDF, 2.55 MB

english, 2014

36

Transcriptome Sequencing Demonstrates that Human Papillomavirus Is Not Active in Cutaneous Squamous Cell Carcinoma

Arron, Sarah T, Ruby, J Graham, Dybbro, Eric, Ganem, Don, DeRisi, Joseph L

Journal:

The Journal of Investigative Dermatology

Year:

2011

Language:

english

File:

PDF, 203 KB

english, 2011

37

Krüppel Mediates the Selective Rebalancing of Ion Channel Expression

Parrish, Jay Z., Kim, Charles C., Tang, Lamont, Bergquist, Sharon, Wang, Tingting, DeRisi, Joseph L., Jan, Lily Yeh, Jan, Yuh Nung, Davis, Graeme W.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.40 MB

english, 2014

38

Yeast Microarrays for Genome Wide Parallel Genetic and Gene Expression Analysis

Deval A. Lashkari, Joseph L. DeRisi, John H. McCusker, Allen F. Namath, Cristl Gentile, Seung Y. Hwang, Patrick O. Brown and Ronald W. Davis

Journal:

Proceedings of the National Academy of Sciences

Year:

1997

Language:

english

File:

PDF, 1.36 MB

english, 1997

39

Exploring Drug-Induced Alterations in Gene Expression in Mycobacterium tuberculosis by Microarray Hybridization

Michael Wilson, Joseph DeRisi, Hans-Henrik Kristensen, Paul Imboden, Sangeeta Rane, Patrick O. Brown and Gary K. Schoolnik

Journal:

Proceedings of the National Academy of Sciences

Year:

1999

Language:

english

File:

PDF, 1.32 MB

english, 1999

40

Parallel Synthesis and Antimalarial Screening of a 4-Aminoquinoline Library

Madrid, Peter B., Wilson, Nathan T., DeRisi, Joseph L., Guy, R. Kiplin

Journal:

Journal of Combinatorial Chemistry

Year:

2004

Language:

english

File:

PDF, 86 KB

english, 2004

41

Incorporation of an Intramolecular Hydrogen-Bonding Motif in the Side Chain of 4-Aminoquinolines Enhances Activity against Drug-Resistant P. falciparum

Madrid, Peter B., Liou, Ally P., DeRisi, Joseph L., Guy, R. Kiplin

Journal:

Journal of Medicinal Chemistry

Year:

2008

Language:

english

File:

PDF, 29 KB

english, 2008

42

Development of a New Generation of 4-Aminoquinoline Antimalarial Compounds Using Predictive Pharmacokinetic and Toxicology Models

Ray, Sunetra, Madrid, Peter B., Catz, Paul, LeValley, Susanna E., Furniss, Michael J., Rausch, Linda L., Guy, R. Kiplin, DeRisi, Joseph L., Iyer, Lalitha V., Green, Carol E., Mirsalis, Jon C.

Journal:

Journal of Medicinal Chemistry

Year:

2010

Language:

english

File:

PDF, 1.20 MB

english, 2010

43

Incorporation of an Intramolecular Hydrogen-Bonding Motif in the Side Chain of 4-Aminoquinolines Enhances Activity against Drug-Resistant P. f alciparum

Madrid, Peter B., Liou, Ally P., DeRisi, Joseph L., Guy, R. Kiplin

Journal:

Journal of Medicinal Chemistry

Year:

2006

Language:

english

File:

PDF, 180 KB

english, 2006

44

A Chemical Rescue Screen Identifies a Plasmodium falciparum Apicoplast Inhibitor Targeting MEP Isoprenoid Precursor Biosynthesis

Wu, Wesley, Herrera, Zachary, Ebert, Danny, Baska, Katie, Cho, Seok H., DeRisi, Joseph L., Yeh, Ellen

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2015

Language:

english

File:

PDF, 544 KB

english, 2015

45

Structure of the transcriptional network controlling white-opaque switching in C andida albicans

Hernday, Aaron D., Lohse, Matthew B., Fordyce, Polly M., Nobile, Clarissa J., DeRisi, Joseph L., Johnson, Alexander D.

Journal:

Molecular Microbiology

Year:

2013

Language:

english

File:

PDF, 1.09 MB

english, 2013

46

Salinipostins A–K, Long-Chain Bicyclic Phosphotriesters as a Potent and Selective Antimalarial Chemotype

Schulze, Christopher J., Navarro, Gabriel, Ebert, Daniel, DeRisi, Joseph, Linington, Roger G.

Journal:

Journal of Organic Chemistry

Year:

2015

Language:

english

File:

PDF, 1.85 MB

english, 2015

47

Transcriptome-wide characterization of the eIF4A signature highlights plasticity in translation regulation

Rubio, Claudia A, Weisburd, Benjamin, Holderfield, Matthew, Arias, Carolina, Fang, Eric, DeRisi, Joseph L, Fanidi, Abdallah

Journal:

Year:

2014

Language:

english

File:

PDF, 3.50 MB

english, 2014

48

Taxonomic reorganization of the family Bornaviridae

Kuhn, Jens H., Dürrwald, Ralf, Bào, Yīmíng, Briese, Thomas, Carbone, Kathryn, Clawson, Anna N., deRisi, Joseph L., Garten, Wolfgang, Jahrling, Peter B., Kolodziejek, Jolanta, Rubbenstroth, Dennis, Sch

Journal:

Archives of Virology

Year:

2015

Language:

english

File:

PDF, 816 KB

english, 2015

49

Pan‐Viral Screening of Respiratory Tract Infections in Adults With and Without Asthma Reveals Unexpected Human Coronavirus and Human Rhinovirus Diversity

Kistler, Amy, Avila, Pedro C., Rouskin, Silvi, Wang, David, Ward, Theresa, Yagi, Shigeo, Schnurr, David, Ganem, Don, DeRisi, Joseph L., Boushey, Homer A.

Journal:

The Journal of Infectious Diseases

Year:

2007

Language:

english

File:

PDF, 3.70 MB

english, 2007

50

Destructin-1 is a collagen-degrading endopeptidase secreted by Pseudogymnoascus destructans , the causative agent of white-nose syndrome

O’Donoghue, Anthony J., Knudsen, Giselle M., Beekman, Chapman, Perry, Jenna A., Johnson, Alexander D., DeRisi, Joseph L., Craik, Charles S., Bennett, Richard J.

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.20 MB

english, 2015